Hdbscan: hdbscan을 가져오는 동안 오류가 발생했습니다.

저는 conda 패키지를 구축하는 데 조금 익숙합니다. 불행히도 아직 배워야 할 것이 있는 것 같습니다. 이것은 내가 만든 conda 패키지의 결함입니다. conda(주로 scikit-learn 및 cython)를 통해 요구 사항을 설치한 다음 pip install 또는 install from source를 사용하면 문제가 해결됩니다. 신고해 주셔서 감사합니다. 나는 콘다 패키징 문제를 조사하고 거기에서 무엇이 잘못되고 있는지 이해할 수 있는지 확인해야 합니다.

빠른 답변 감사합니다.

설치가 여전히 작동하지 않았습니다. conda 32비트 패키지와 64비트 패키지 모두에서 시도했습니다. 작동하게 할 수 있는 다른 방법이 있습니까?

pip 설치의 경우 오류는 다음과 같습니다.

[Anaconda2] C:\Users\user_name>pip install hdbscan
Collecting hdbscan
  Using cached hdbscan-0.6.2.tar.gz
Requirement already satisfied (use --upgrade to upgrade): scikit-learn>=0.16 in
c:\anaconda2\lib\site-packages (from hdbscan)
Requirement already satisfied (use --upgrade to upgrade): cython>=0.17 in c:\ana
conda2\lib\site-packages (from hdbscan)
Building wheels for collected packages: hdbscan
  Running setup.py bdist_wheel for hdbscan
  Complete output from command C:\Anaconda2\python.exe -c "import setuptools;__f
ile__='c:\\users\\user_name\\appdata\\local\\temp\\pip-build-yf7q3s\\hdbscan\\setup.
py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))
" bdist_wheel -d c:\users\user_name\appdata\local\temp\tmpbmg3edpip-wheel-:
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build\lib.win-amd64-2.7
  creating build\lib.win-amd64-2.7\hdbscan
  copying hdbscan\hdbscan_.py -> build\lib.win-amd64-2.7\hdbscan
  copying hdbscan\plots.py -> build\lib.win-amd64-2.7\hdbscan
  copying hdbscan\robust_single_linkage_.py -> build\lib.win-amd64-2.7\hdbscan
  copying hdbscan\__init__.py -> build\lib.win-amd64-2.7\hdbscan
  running build_ext
  skipping 'hdbscan\_hdbscan_tree.c' Cython extension (up-to-date)
  building 'hdbscan._hdbscan_tree' extension
  creating build\temp.win-amd64-2.7
  creating build\temp.win-amd64-2.7\Release
  creating build\temp.win-amd64-2.7\Release\hdbscan
  C:\Users\user_name\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9
.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -IC:\Anaconda2\lib\s
ite-packages\numpy\core\include -IC:\Anaconda2\include -IC:\Anaconda2\PC /Tchdbs
can\_hdbscan_tree.c /Fobuild\temp.win-amd64-2.7\Release\hdbscan\_hdbscan_tree.ob
j
  _hdbscan_tree.c
  c:\anaconda2\lib\site-packages\numpy\core\include\numpy\npy_1_7_deprecated_api
.h(12) : Warning Msg: Using deprecated NumPy API, disable it by #defining NPY_NO
_DEPRECATED_API NPY_1_7_API_VERSION
  hdbscan\_hdbscan_tree.c(2560) : warning C4244: 'function' : conversion from '_
_pyx_t_5numpy_intp_t' to 'long', possible loss of data
  hdbscan\_hdbscan_tree.c(2787) : warning C4244: '=' : conversion from '__pyx_t_
5numpy_intp_t' to 'int', possible loss of data
  hdbscan\_hdbscan_tree.c(2820) : warning C4244: '+=' : conversion from 'Py_ssiz
e_t' to 'long', possible loss of data
  hdbscan\_hdbscan_tree.c(2831) : warning C4244: '+=' : conversion from 'Py_ssiz
e_t' to 'long', possible loss of data
  hdbscan\_hdbscan_tree.c(2842) : warning C4244: '+=' : conversion from 'Py_ssiz
e_t' to 'long', possible loss of data
  hdbscan\_hdbscan_tree.c(2854) : warning C4244: '+=' : conversion from 'Py_ssiz
e_t' to 'long', possible loss of data
  hdbscan\_hdbscan_tree.c(2899) : warning C4244: '=' : conversion from '__pyx_t_
5numpy_intp_t' to 'int', possible loss of data
  hdbscan\_hdbscan_tree.c(2940) : warning C4244: '=' : conversion from '__pyx_t_
5numpy_intp_t' to 'int', possible loss of data
  hdbscan\_hdbscan_tree.c(4122) : warning C4244: 'function' : conversion from '_
_pyx_t_5numpy_intp_t' to 'long', possible loss of data
  hdbscan\_hdbscan_tree.c(5242) : warning C4244: 'function' : conversion from '_
_pyx_t_5numpy_intp_t' to 'long', possible loss of data
  hdbscan\_hdbscan_tree.c(6278) : warning C4244: 'function' : conversion from '_
_pyx_t_5numpy_intp_t' to 'long', possible loss of data
  hdbscan\_hdbscan_tree.c(6351) : warning C4244: 'function' : conversion from '_
_pyx_t_5numpy_intp_t' to 'long', possible loss of data
  hdbscan\_hdbscan_tree.c(21049) : error C2275: 'PyGILState_STATE' : illegal use
 of this type as an expression
          C:\Anaconda2\include\pystate.h(137) : see declaration of 'PyGILState_S
TATE'
  hdbscan\_hdbscan_tree.c(21049) : error C2146: syntax error : missing ';' befor
e identifier '__pyx_gilstate_save'
  hdbscan\_hdbscan_tree.c(21049) : error C2065: '__pyx_gilstate_save' : undeclar
ed identifier
  hdbscan\_hdbscan_tree.c(21120) : error C2065: '__pyx_gilstate_save' : undeclar
ed identifier
  hdbscan\_hdbscan_tree.c(21146) : error C2275: 'PyGILState_STATE' : illegal use
 of this type as an expression
          C:\Anaconda2\include\pystate.h(137) : see declaration of 'PyGILState_S
TATE'
  hdbscan\_hdbscan_tree.c(21146) : error C2146: syntax error : missing ';' befor
e identifier '__pyx_gilstate_save'
  hdbscan\_hdbscan_tree.c(21146) : error C2065: '__pyx_gilstate_save' : undeclar
ed identifier
  hdbscan\_hdbscan_tree.c(21219) : error C2065: '__pyx_gilstate_save' : undeclar
ed identifier
  hdbscan\_hdbscan_tree.c(21246) : error C2275: 'PyGILState_STATE' : illegal use
 of this type as an expression
          C:\Anaconda2\include\pystate.h(137) : see declaration of 'PyGILState_S
TATE'
  hdbscan\_hdbscan_tree.c(21246) : error C2146: syntax error : missing ';' befor
e identifier '__pyx_gilstate_save'
  hdbscan\_hdbscan_tree.c(21246) : error C2065: '__pyx_gilstate_save' : undeclar
ed identifier
  hdbscan\_hdbscan_tree.c(21336) : error C2065: '__pyx_gilstate_save' : undeclar
ed identifier
  hdbscan\_hdbscan_tree.c(22003) : error C2275: 'PyGILState_STATE' : illegal use
 of this type as an expression
          C:\Anaconda2\include\pystate.h(137) : see declaration of 'PyGILState_S
TATE'
  hdbscan\_hdbscan_tree.c(22003) : error C2146: syntax error : missing ';' befor
e identifier '__pyx_gilstate_save'
  hdbscan\_hdbscan_tree.c(22003) : error C2065: '__pyx_gilstate_save' : undeclar
ed identifier
  hdbscan\_hdbscan_tree.c(22029) : error C2065: '__pyx_gilstate_save' : undeclar
ed identifier
  error: command 'C:\\Users\\user_name\\AppData\\Local\\Programs\\Common\\Microsoft\
\Visual C++ for Python\\9.0\\VC\\Bin\\amd64\\cl.exe' failed with exit status 2

  ----------------------------------------
  Failed building wheel for hdbscan
Failed to build hdbscan
Installing collected packages: hdbscan
  Running setup.py install for hdbscan
    Complete output from command C:\Anaconda2\python.exe -c "import setuptools,
tokenize;__file__='c:\\users\\user_name\\appdata\\local\\temp\\pip-build-yf7q3s\\hdb
scan\\setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().re
place('\r\n', '\n'), __file__, 'exec'))" install --record c:\users\user_name\appdata
\local\temp\pip-a6ueto-record\install-record.txt --single-version-externally-man
aged --compile:
    running install
    running build
    running build_py
    running build_ext
    skipping 'hdbscan\_hdbscan_tree.c' Cython extension (up-to-date)
    building 'hdbscan._hdbscan_tree' extension
    C:\Users\user_name\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python
\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -IC:\Anaconda2\lib
\site-packages\numpy\core\include -IC:\Anaconda2\include -IC:\Anaconda2\PC /Tchd
bscan\_hdbscan_tree.c /Fobuild\temp.win-amd64-2.7\Release\hdbscan\_hdbscan_tree.
obj
    _hdbscan_tree.c
    c:\anaconda2\lib\site-packages\numpy\core\include\numpy\npy_1_7_deprecated_a
pi.h(12) : Warning Msg: Using deprecated NumPy API, disable it by #defining NPY_
NO_DEPRECATED_API NPY_1_7_API_VERSION
    hdbscan\_hdbscan_tree.c(2560) : warning C4244: 'function' : conversion from
'__pyx_t_5numpy_intp_t' to 'long', possible loss of data
    hdbscan\_hdbscan_tree.c(2787) : warning C4244: '=' : conversion from '__pyx_
t_5numpy_intp_t' to 'int', possible loss of data
    hdbscan\_hdbscan_tree.c(2820) : warning C4244: '+=' : conversion from 'Py_ss
ize_t' to 'long', possible loss of data
    hdbscan\_hdbscan_tree.c(2831) : warning C4244: '+=' : conversion from 'Py_ss
ize_t' to 'long', possible loss of data
    hdbscan\_hdbscan_tree.c(2842) : warning C4244: '+=' : conversion from 'Py_ss
ize_t' to 'long', possible loss of data
    hdbscan\_hdbscan_tree.c(2854) : warning C4244: '+=' : conversion from 'Py_ss
ize_t' to 'long', possible loss of data
    hdbscan\_hdbscan_tree.c(2899) : warning C4244: '=' : conversion from '__pyx_
t_5numpy_intp_t' to 'int', possible loss of data
    hdbscan\_hdbscan_tree.c(2940) : warning C4244: '=' : conversion from '__pyx_
t_5numpy_intp_t' to 'int', possible loss of data
    hdbscan\_hdbscan_tree.c(4122) : warning C4244: 'function' : conversion from
'__pyx_t_5numpy_intp_t' to 'long', possible loss of data
    hdbscan\_hdbscan_tree.c(5242) : warning C4244: 'function' : conversion from
'__pyx_t_5numpy_intp_t' to 'long', possible loss of data
    hdbscan\_hdbscan_tree.c(6278) : warning C4244: 'function' : conversion from
'__pyx_t_5numpy_intp_t' to 'long', possible loss of data
    hdbscan\_hdbscan_tree.c(6351) : warning C4244: 'function' : conversion from
'__pyx_t_5numpy_intp_t' to 'long', possible loss of data
    hdbscan\_hdbscan_tree.c(21049) : error C2275: 'PyGILState_STATE' : illegal u
se of this type as an expression
            C:\Anaconda2\include\pystate.h(137) : see declaration of 'PyGILState
_STATE'
    hdbscan\_hdbscan_tree.c(21049) : error C2146: syntax error : missing ';' bef
ore identifier '__pyx_gilstate_save'
    hdbscan\_hdbscan_tree.c(21049) : error C2065: '__pyx_gilstate_save' : undecl
ared identifier
    hdbscan\_hdbscan_tree.c(21120) : error C2065: '__pyx_gilstate_save' : undecl
ared identifier
    hdbscan\_hdbscan_tree.c(21146) : error C2275: 'PyGILState_STATE' : illegal u
se of this type as an expression
            C:\Anaconda2\include\pystate.h(137) : see declaration of 'PyGILState
_STATE'
    hdbscan\_hdbscan_tree.c(21146) : error C2146: syntax error : missing ';' bef
ore identifier '__pyx_gilstate_save'
    hdbscan\_hdbscan_tree.c(21146) : error C2065: '__pyx_gilstate_save' : undecl
ared identifier
    hdbscan\_hdbscan_tree.c(21219) : error C2065: '__pyx_gilstate_save' : undecl
ared identifier
    hdbscan\_hdbscan_tree.c(21246) : error C2275: 'PyGILState_STATE' : illegal u
se of this type as an expression
            C:\Anaconda2\include\pystate.h(137) : see declaration of 'PyGILState
_STATE'
    hdbscan\_hdbscan_tree.c(21246) : error C2146: syntax error : missing ';' bef
ore identifier '__pyx_gilstate_save'
    hdbscan\_hdbscan_tree.c(21246) : error C2065: '__pyx_gilstate_save' : undecl
ared identifier
    hdbscan\_hdbscan_tree.c(21336) : error C2065: '__pyx_gilstate_save' : undecl
ared identifier
    hdbscan\_hdbscan_tree.c(22003) : error C2275: 'PyGILState_STATE' : illegal u
se of this type as an expression
            C:\Anaconda2\include\pystate.h(137) : see declaration of 'PyGILState
_STATE'
    hdbscan\_hdbscan_tree.c(22003) : error C2146: syntax error : missing ';' bef
ore identifier '__pyx_gilstate_save'
    hdbscan\_hdbscan_tree.c(22003) : error C2065: '__pyx_gilstate_save' : undecl
ared identifier
    hdbscan\_hdbscan_tree.c(22029) : error C2065: '__pyx_gilstate_save' : undecl
ared identifier
    error: command 'C:\\Users\\user_name\\AppData\\Local\\Programs\\Common\\Microsof
t\\Visual C++ for Python\\9.0\\VC\\Bin\\amd64\\cl.exe' failed with exit status 2


    ----------------------------------------
Command "C:\Anaconda2\python.exe -c "import setuptools, tokenize;__file__='c:\\u
sers\\user_name\\appdata\\local\\temp\\pip-build-yf7q3s\\hdbscan\\setup.py';exec(com
pile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __f
ile__, 'exec'))" install --record c:\users\user_name\appdata\local\temp\pip-a6ueto-r
ecord\install-record.txt --single-version-externally-managed --compile" failed w
ith error code 1 in c:\users\user_name\appdata\local\temp\pip-build-yf7q3s\hdbscan

수동 설치의 경우:

F:\downloads\hdbscan-master\hdbscan-master>python setup.py install
running install
running bdist_egg
running egg_info
writing requirements to hdbscan.egg-info\requires.txt
writing hdbscan.egg-info\PKG-INFO
writing top-level names to hdbscan.egg-info\top_level.txt
writing dependency_links to hdbscan.egg-info\dependency_links.txt
reading manifest file 'hdbscan.egg-info\SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'hdbscan.egg-info\SOURCES.txt'
installing library code to build\bdist.win-amd64\egg
running install_lib
running build_py
creating build\lib.win-amd64-2.7
creating build\lib.win-amd64-2.7\hdbscan
copying hdbscan\hdbscan_.py -> build\lib.win-amd64-2.7\hdbscan
copying hdbscan\plots.py -> build\lib.win-amd64-2.7\hdbscan
copying hdbscan\robust_single_linkage_.py -> build\lib.win-amd64-2.7\hdbscan
copying hdbscan\__init__.py -> build\lib.win-amd64-2.7\hdbscan
running build_ext
skipping 'hdbscan\_hdbscan_tree.c' Cython extension (up-to-date)
building 'hdbscan._hdbscan_tree' extension
creating build\temp.win-amd64-2.7
creating build\temp.win-amd64-2.7\Release
creating build\temp.win-amd64-2.7\Release\hdbscan
C:\Users\Intel\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0
\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -IC:\Anaconda2\lib\sit
e-packages\numpy\core\include -IC:\Anaconda2\include -IC:\Anaconda2\PC /Tchdbsca
n\_hdbscan_tree.c /Fobuild\temp.win-amd64-2.7\Release\hdbscan\_hdbscan_tree.obj
_hdbscan_tree.c
c:\anaconda2\lib\site-packages\numpy\core\include\numpy\npy_1_7_deprecated_api.h
(12) : Warning Msg: Using deprecated NumPy API, disable it by #defining NPY_NO_D
EPRECATED_API NPY_1_7_API_VERSION
hdbscan\_hdbscan_tree.c(2560) : warning C4244: 'function' : conversion from '__p
yx_t_5numpy_intp_t' to 'long', possible loss of data
hdbscan\_hdbscan_tree.c(2787) : warning C4244: '=' : conversion from '__pyx_t_5n
umpy_intp_t' to 'int', possible loss of data
hdbscan\_hdbscan_tree.c(2820) : warning C4244: '+=' : conversion from 'Py_ssize_
t' to 'long', possible loss of data
hdbscan\_hdbscan_tree.c(2831) : warning C4244: '+=' : conversion from 'Py_ssize_
t' to 'long', possible loss of data
hdbscan\_hdbscan_tree.c(2842) : warning C4244: '+=' : conversion from 'Py_ssize_
t' to 'long', possible loss of data
hdbscan\_hdbscan_tree.c(2854) : warning C4244: '+=' : conversion from 'Py_ssize_
t' to 'long', possible loss of data
hdbscan\_hdbscan_tree.c(2899) : warning C4244: '=' : conversion from '__pyx_t_5n
umpy_intp_t' to 'int', possible loss of data
hdbscan\_hdbscan_tree.c(2940) : warning C4244: '=' : conversion from '__pyx_t_5n
umpy_intp_t' to 'int', possible loss of data
hdbscan\_hdbscan_tree.c(4122) : warning C4244: 'function' : conversion from '__p
yx_t_5numpy_intp_t' to 'long', possible loss of data
hdbscan\_hdbscan_tree.c(5242) : warning C4244: 'function' : conversion from '__p
yx_t_5numpy_intp_t' to 'long', possible loss of data
hdbscan\_hdbscan_tree.c(6278) : warning C4244: 'function' : conversion from '__p
yx_t_5numpy_intp_t' to 'long', possible loss of data
hdbscan\_hdbscan_tree.c(6351) : warning C4244: 'function' : conversion from '__p
yx_t_5numpy_intp_t' to 'long', possible loss of data
hdbscan\_hdbscan_tree.c(21049) : error C2275: 'PyGILState_STATE' : illegal use o
f this type as an expression
        C:\Anaconda2\include\pystate.h(137) : see declaration of 'PyGILState_STA
TE'
hdbscan\_hdbscan_tree.c(21049) : error C2146: syntax error : missing ';' before
identifier '__pyx_gilstate_save'
hdbscan\_hdbscan_tree.c(21049) : error C2065: '__pyx_gilstate_save' : undeclared
 identifier
hdbscan\_hdbscan_tree.c(21120) : error C2065: '__pyx_gilstate_save' : undeclared
 identifier
hdbscan\_hdbscan_tree.c(21146) : error C2275: 'PyGILState_STATE' : illegal use o
f this type as an expression
        C:\Anaconda2\include\pystate.h(137) : see declaration of 'PyGILState_STA
TE'
hdbscan\_hdbscan_tree.c(21146) : error C2146: syntax error : missing ';' before
identifier '__pyx_gilstate_save'
hdbscan\_hdbscan_tree.c(21146) : error C2065: '__pyx_gilstate_save' : undeclared
 identifier
hdbscan\_hdbscan_tree.c(21219) : error C2065: '__pyx_gilstate_save' : undeclared
 identifier
hdbscan\_hdbscan_tree.c(21246) : error C2275: 'PyGILState_STATE' : illegal use o
f this type as an expression
        C:\Anaconda2\include\pystate.h(137) : see declaration of 'PyGILState_STA
TE'
hdbscan\_hdbscan_tree.c(21246) : error C2146: syntax error : missing ';' before
identifier '__pyx_gilstate_save'
hdbscan\_hdbscan_tree.c(21246) : error C2065: '__pyx_gilstate_save' : undeclared
 identifier
hdbscan\_hdbscan_tree.c(21336) : error C2065: '__pyx_gilstate_save' : undeclared
 identifier
hdbscan\_hdbscan_tree.c(22003) : error C2275: 'PyGILState_STATE' : illegal use o
f this type as an expression
        C:\Anaconda2\include\pystate.h(137) : see declaration of 'PyGILState_STA
TE'
hdbscan\_hdbscan_tree.c(22003) : error C2146: syntax error : missing ';' before
identifier '__pyx_gilstate_save'
hdbscan\_hdbscan_tree.c(22003) : error C2065: '__pyx_gilstate_save' : undeclared
 identifier
hdbscan\_hdbscan_tree.c(22029) : error C2065: '__pyx_gilstate_save' : undeclared
 identifier
error: command 'C:\\Users\\user_name\\AppData\\Local\\Programs\\Common\\Microsoft\\V
isual C++ for Python\\9.0\\VC\\Bin\\amd64\\cl.exe' failed with exit status 2

좋지 않아 보인다. 여기서 무엇이 잘못되었는지 잘 모르겠습니다. 저는 Windows에 설치한 경험이 거의 없습니다. 수동 설치를 사용하고 hdbscan 디렉토리에 있는 모든 .c 파일을 삭제하는 것이 좋습니다. 즉

hdbscan/_hdbscan_tree.c
hdbscan/_hdbscan_boruvka.x
hdbscan/_hdbscan_linkage.c
hdbscan/_hdbscan_reachability.c

그런 다음 다시 빌드해 보세요. Windows가 좋아하지 않는 C 파일에 무언가가 있는 것 같습니다.

우분투에서 시도했습니다. 우분투에서 잘 작동했습니다

작업에 성공하셨다니 다행입니다. Windows 문제에 대해 유감스럽게 생각합니다(Windows가 가장 큰 문제 원인인 것 같습니다). 지금은 문제를 열어 두겠습니다. 팀의 다른 사람들 중 일부는 테스트할 수 있는 Windows 시스템에 액세스할 수 있으며 Windows 문제를 해결하기 위해 노력할 것입니다. 문제 보고 감사합니다!

영화,
불행히도 win7 64 env에서 위와 같은 오류 메시지가 나타납니다.
문안 인사
하리

이 시점에서 Windows 경험/지식이 있는 사람에게 도움을 요청해야 합니다. 모든 것이 Linux 및 MacOS X(내가 액세스할 수 있는 환경)에서 잘 작동하고, 적어도 때때로 Windows에서는 작동하는 것 같습니다... Windows에서 컴파일한 경험이 있는 사람이라면 누구라도 도움을 주시면 감사하겠습니다!

참고로; 이것은 실패한 최근 pip 설치입니까? 도움이 되는 개인이 제공한 대로 얼마 전 win64용 휠 패키지를 추가하려고 했습니다. 아마도 이것이 문제를 일으킨 것입니까?

과연 핍입니다. 그러나 문제는 버전 1.10 이상에 cython이 필요한 numpy 때문이라고 생각합니다. Cython 설치 시 잘 설치되었습니다. 빠른 답변 감사합니다.

확인할 수 있습니다. 먼저 cython을 설치한 다음 우분투 16.04에 hdbscan을 설치해야 했습니다.