Xgboost: Des problèmes lors de l'installation sous OSX 10.11.6 ?
J'essaie d'installer le wrapper python de xgboost dans OSX 10.11.6 avec python3. Tout d'abord, j'ai fait :
user@MacBook-Pro-de-User-2:~$ brew install gcc --without-multilib
==> Using the sandbox
==> Downloading https://ftpmirror.gnu.org/gcc/gcc-6.2.0/gcc-6.2.0.tar.bz2
Already downloaded: /Users/user/Library/Caches/Homebrew/gcc-6.2.0.tar.bz2
==> Downloading https://raw.githubusercontent.com/Homebrew/formula-patches/e9e0
Already downloaded: /Users/user/Library/Caches/Homebrew/gcc--patch-863957f90a934ee8f89707980473769cff47ca0663c3906992da6afb242fb220.patch
==> Patching
==> Applying 6.1.0-jit.patch
patching file gcc/jit/Make-lang.in
==> ../configure --build=x86_64-apple-darwin15.6.0 --prefix=/usr/local/Cellar/g
==> make bootstrap
==> make install
🍺 /usr/local/Cellar/gcc/6.2.0: 1,357 files, 242.5M, built in 69 minutes 18 seconds
Ensuite, lorsque je procède à l'installation de xgboost avec pip3, j'obtiens ce qui suit :
user@MacBook-Pro-de-User-2:~$ pip3 install xgboost
Collecting xgboost
Using cached xgboost-0.6a2.tar.gz
Complete output from command python setup.py egg_info:
rm -f -rf build build_plugin lib bin *~ */*~ */*/*~ */*/*/*~ */*.o */*/*.o */*/*/*.o xgboost
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/learner.o src/learner.cc >build/learner.d
/bin/sh: clang-omp++: command not found
make: *** [build/learner.o] Error 127
make: *** Waiting for unfinished jobs....
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/logging.o src/logging.cc >build/logging.d
/bin/sh: clang-omp++: command not found
make: *** [build/logging.o] Error 127
-----------------------------
Building multi-thread xgboost failed
Start to build single-thread xgboost
rm -f -rf build build_plugin lib bin *~ */*~ */*/*~ */*/*/*~ */*.o */*/*.o */*/*/*.o xgboost
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/learner.o src/learner.cc >build/learner.d
/bin/sh: clang-omp++: command not found
make: *** [build/learner.o] Error 127
make: *** Waiting for unfinished jobs....
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/logging.o src/logging.cc >build/logging.d
/bin/sh: clang-omp++: command not found
make: *** [build/logging.o] Error 127
Successfully build single-thread xgboost
If you want multi-threaded version
See additional instructions in doc/build.md
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/private/var/folders/hg/zkgs3l417b7_0l4vth4bf8l00000gn/T/pip-build-hsmd0nxh/xgboost/setup.py", line 29, in <module>
LIB_PATH = libpath['find_lib_path']()
File "/private/var/folders/hg/zkgs3l417b7_0l4vth4bf8l00000gn/T/pip-build-hsmd0nxh/xgboost/xgboost/libpath.py", line 45, in find_lib_path
'List of candidates:\n' + ('\n'.join(dll_path)))
XGBoostLibraryNotFound: Cannot find XGBoost Libarary in the candicate path, did you install compilers and run build.sh in root path?
List of candidates:
/private/var/folders/hg/zkgs3l417b7_0l4vth4bf8l00000gn/T/pip-build-hsmd0nxh/xgboost/xgboost/libxgboost.so
/private/var/folders/hg/zkgs3l417b7_0l4vth4bf8l00000gn/T/pip-build-hsmd0nxh/xgboost/xgboost/../../lib/libxgboost.so
/private/var/folders/hg/zkgs3l417b7_0l4vth4bf8l00000gn/T/pip-build-hsmd0nxh/xgboost/xgboost/./lib/libxgboost.so
----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /private/var/folders/hg/zkgs3l417b7_0l4vth4bf8l00000gn/T/pip-build-hsmd0nxh/xgboost/
Ensuite, j'ai essayé de le construire comme l' indique la
Last login: Tue Aug 23 20:53:31 on ttys000
user@MacBook-Pro-de-User-2:~$ git clone --recursive https://github.com/dmlc/xgboost
Cloning into 'xgboost'...
remote: Counting objects: 17651, done.
remote: Compressing objects: 100% (28/28), done.
remote: Total 17651 (delta 9), reused 0 (delta 0), pack-reused 17611
Receiving objects: 100% (17651/17651), 5.80 MiB | 1.08 MiB/s, done.
Resolving deltas: 100% (10851/10851), done.
Checking connectivity... done.
Submodule 'dmlc-core' (https://github.com/dmlc/dmlc-core) registered for path 'dmlc-core'
Submodule 'rabit' (https://github.com/dmlc/rabit) registered for path 'rabit'
Cloning into 'dmlc-core'...
remote: Counting objects: 3710, done.
remote: Total 3710 (delta 0), reused 0 (delta 0), pack-reused 3710
Receiving objects: 100% (3710/3710), 822.86 KiB | 864.00 KiB/s, done.
Resolving deltas: 100% (2197/2197), done.
Checking connectivity... done.
Submodule path 'dmlc-core': checked out 'd8d4dccb8bd89af9f57aa19e7523f0b755563ca4'
Cloning into 'rabit'...
remote: Counting objects: 3096, done.
remote: Compressing objects: 100% (6/6), done.
remote: Total 3096 (delta 0), reused 0 (delta 0), pack-reused 3090
Receiving objects: 100% (3096/3096), 886.44 KiB | 904.00 KiB/s, done.
Resolving deltas: 100% (2007/2007), done.
Checking connectivity... done.
Submodule path 'rabit': checked out '2dd7476ad7e4afe97eb579d39aab226ff74400a6'
Ensuite, j'ai essayé de construire comme suit:
user@MacBook-Pro-de-User-2:/$ cd xgboost; cp make/config.mk ./config.mk; make -j4
-bash: cd: xgboost: No such file or directory
cp: make/config.mk: No such file or directory
make: *** No targets specified and no makefile found. Stop.
Une idée de la façon d'installer correctement xgboost ?... il y a un mois, j'ai installé xgboost avec pip3 et je n'ai pas rencontré les problèmes ci-dessus.
alonsopg
Tous les 37 commentaires
Apparemment, cela a fonctionné pour OSX:
user@MacBook-Pro-de-User-2:~$ cd xgboost/
user@MacBook-Pro-de-User-2:~/xgboost$ clear
user@MacBook-Pro-de-User-2:~/xgboost$ ls
CMakeLists.txt R-package/ doc/ rabit/
CONTRIBUTORS.md README.md include/ src/
ISSUE_TEMPLATE.md amalgamation/ jvm-packages/ tests/
LICENSE build.sh* make/
Makefile demo/ plugin/
NEWS.md dmlc-core/ python-package/
user@MacBook-Pro-de-User-2:~/xgboost$ ./build.sh
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/learner.o src/learner.cc >build/learner.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/learner.cc -o build/learner.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/logging.o src/logging.cc >build/logging.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/logging.cc -o build/logging.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/c_api/c_api.o src/c_api/c_api.cc >build/c_api/c_api.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/c_api/c_api.cc -o build/c_api/c_api.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/c_api/c_api_error.o src/c_api/c_api_error.cc >build/c_api/c_api_error.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/c_api/c_api_error.cc -o build/c_api/c_api_error.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/common/common.o src/common/common.cc >build/common/common.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/common/common.cc -o build/common/common.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/data/data.o src/data/data.cc >build/data/data.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/data/data.cc -o build/data/data.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/data/simple_csr_source.o src/data/simple_csr_source.cc >build/data/simple_csr_source.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/data/simple_csr_source.cc -o build/data/simple_csr_source.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/data/simple_dmatrix.o src/data/simple_dmatrix.cc >build/data/simple_dmatrix.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/data/simple_dmatrix.cc -o build/data/simple_dmatrix.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/data/sparse_page_dmatrix.o src/data/sparse_page_dmatrix.cc >build/data/sparse_page_dmatrix.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/data/sparse_page_dmatrix.cc -o build/data/sparse_page_dmatrix.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/data/sparse_page_raw_format.o src/data/sparse_page_raw_format.cc >build/data/sparse_page_raw_format.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/data/sparse_page_raw_format.cc -o build/data/sparse_page_raw_format.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/data/sparse_page_source.o src/data/sparse_page_source.cc >build/data/sparse_page_source.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/data/sparse_page_source.cc -o build/data/sparse_page_source.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/data/sparse_page_writer.o src/data/sparse_page_writer.cc >build/data/sparse_page_writer.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/data/sparse_page_writer.cc -o build/data/sparse_page_writer.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/gbm/gblinear.o src/gbm/gblinear.cc >build/gbm/gblinear.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/gbm/gblinear.cc -o build/gbm/gblinear.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/gbm/gbm.o src/gbm/gbm.cc >build/gbm/gbm.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/gbm/gbm.cc -o build/gbm/gbm.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/gbm/gbtree.o src/gbm/gbtree.cc >build/gbm/gbtree.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/gbm/gbtree.cc -o build/gbm/gbtree.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/metric/elementwise_metric.o src/metric/elementwise_metric.cc >build/metric/elementwise_metric.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/metric/elementwise_metric.cc -o build/metric/elementwise_metric.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/metric/metric.o src/metric/metric.cc >build/metric/metric.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/metric/metric.cc -o build/metric/metric.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/metric/multiclass_metric.o src/metric/multiclass_metric.cc >build/metric/multiclass_metric.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/metric/multiclass_metric.cc -o build/metric/multiclass_metric.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/metric/rank_metric.o src/metric/rank_metric.cc >build/metric/rank_metric.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/metric/rank_metric.cc -o build/metric/rank_metric.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/objective/multiclass_obj.o src/objective/multiclass_obj.cc >build/objective/multiclass_obj.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/objective/multiclass_obj.cc -o build/objective/multiclass_obj.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/objective/objective.o src/objective/objective.cc >build/objective/objective.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/objective/objective.cc -o build/objective/objective.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/objective/rank_obj.o src/objective/rank_obj.cc >build/objective/rank_obj.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/objective/rank_obj.cc -o build/objective/rank_obj.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/objective/regression_obj.o src/objective/regression_obj.cc >build/objective/regression_obj.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/objective/regression_obj.cc -o build/objective/regression_obj.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/tree/tree_model.o src/tree/tree_model.cc >build/tree/tree_model.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/tree/tree_model.cc -o build/tree/tree_model.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/tree/tree_updater.o src/tree/tree_updater.cc >build/tree/tree_updater.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/tree/tree_updater.cc -o build/tree/tree_updater.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/tree/updater_colmaker.o src/tree/updater_colmaker.cc >build/tree/updater_colmaker.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/tree/updater_colmaker.cc -o build/tree/updater_colmaker.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/tree/updater_histmaker.o src/tree/updater_histmaker.cc >build/tree/updater_histmaker.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/tree/updater_histmaker.cc -o build/tree/updater_histmaker.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/tree/updater_prune.o src/tree/updater_prune.cc >build/tree/updater_prune.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/tree/updater_prune.cc -o build/tree/updater_prune.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/tree/updater_refresh.o src/tree/updater_refresh.cc >build/tree/updater_refresh.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/tree/updater_refresh.cc -o build/tree/updater_refresh.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/tree/updater_skmaker.o src/tree/updater_skmaker.cc >build/tree/updater_skmaker.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/tree/updater_skmaker.cc -o build/tree/updater_skmaker.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/tree/updater_sync.o src/tree/updater_sync.cc >build/tree/updater_sync.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/tree/updater_sync.cc -o build/tree/updater_sync.o
cd dmlc-core; /Library/Developer/CommandLineTools/usr/bin/make libdmlc.a config=/Users/user/xgboost/make/config.mk; cd /Users/user/xgboost
g++-6 -c -O3 -Wall -msse2 -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -o line_split.o src/io/line_split.cc
g++-6 -c -O3 -Wall -msse2 -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -o recordio_split.o src/io/recordio_split.cc
g++-6 -c -O3 -Wall -msse2 -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -o input_split_base.o src/io/input_split_base.cc
g++-6 -c -O3 -Wall -msse2 -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -o io.o src/io.cc
g++-6 -c -O3 -Wall -msse2 -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -o local_filesys.o src/io/local_filesys.cc
g++-6 -c -O3 -Wall -msse2 -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -o data.o src/data.cc
g++-6 -c -O3 -Wall -msse2 -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -o recordio.o src/recordio.cc
g++-6 -c -O3 -Wall -msse2 -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -o config.o src/config.cc
ar cr libdmlc.a line_split.o recordio_split.o input_split_base.o io.o local_filesys.o data.o recordio.o config.o
cd rabit; /Library/Developer/CommandLineTools/usr/bin/make lib/librabit.a; cd /Users/user/xgboost
g++-6 -c -O3 -msse2 -Wall -Wextra -Wno-unused-parameter -Wno-unknown-pragmas -std=c++0x -fPIC -o allreduce_base.o src/allreduce_base.cc
g++-6 -c -O3 -msse2 -Wall -Wextra -Wno-unused-parameter -Wno-unknown-pragmas -std=c++0x -fPIC -o allreduce_robust.o src/allreduce_robust.cc
g++-6 -c -O3 -msse2 -Wall -Wextra -Wno-unused-parameter -Wno-unknown-pragmas -std=c++0x -fPIC -o engine.o src/engine.cc
g++-6 -c -O3 -msse2 -Wall -Wextra -Wno-unused-parameter -Wno-unknown-pragmas -std=c++0x -fPIC -o c_api.o src/c_api.cc
ar cr lib/librabit.a allreduce_base.o allreduce_robust.o engine.o c_api.o
ar crv lib/libxgboost.a build/learner.o build/logging.o build/c_api/c_api.o build/c_api/c_api_error.o build/common/common.o build/data/data.o build/data/simple_csr_source.o build/data/simple_dmatrix.o build/data/sparse_page_dmatrix.o build/data/sparse_page_raw_format.o build/data/sparse_page_source.o build/data/sparse_page_writer.o build/gbm/gblinear.o build/gbm/gbm.o build/gbm/gbtree.o build/metric/elementwise_metric.o build/metric/metric.o build/metric/multiclass_metric.o build/metric/rank_metric.o build/objective/multiclass_obj.o build/objective/objective.o build/objective/rank_obj.o build/objective/regression_obj.o build/tree/tree_model.o build/tree/tree_updater.o build/tree/updater_colmaker.o build/tree/updater_histmaker.o build/tree/updater_prune.o build/tree/updater_refresh.o build/tree/updater_skmaker.o build/tree/updater_sync.o
a - build/learner.o
a - build/logging.o
a - build/c_api/c_api.o
a - build/c_api/c_api_error.o
a - build/common/common.o
a - build/data/data.o
a - build/data/simple_csr_source.o
a - build/data/simple_dmatrix.o
a - build/data/sparse_page_dmatrix.o
a - build/data/sparse_page_raw_format.o
a - build/data/sparse_page_source.o
a - build/data/sparse_page_writer.o
a - build/gbm/gblinear.o
a - build/gbm/gbm.o
a - build/gbm/gbtree.o
a - build/metric/elementwise_metric.o
a - build/metric/metric.o
a - build/metric/multiclass_metric.o
a - build/metric/rank_metric.o
a - build/objective/multiclass_obj.o
a - build/objective/objective.o
a - build/objective/rank_obj.o
a - build/objective/regression_obj.o
a - build/tree/tree_model.o
a - build/tree/tree_updater.o
a - build/tree/updater_colmaker.o
a - build/tree/updater_histmaker.o
a - build/tree/updater_prune.o
a - build/tree/updater_refresh.o
a - build/tree/updater_skmaker.o
a - build/tree/updater_sync.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -shared -o lib/libxgboost.so build/learner.o build/logging.o build/c_api/c_api.o build/c_api/c_api_error.o build/common/common.o build/data/data.o build/data/simple_csr_source.o build/data/simple_dmatrix.o build/data/sparse_page_dmatrix.o build/data/sparse_page_raw_format.o build/data/sparse_page_source.o build/data/sparse_page_writer.o build/gbm/gblinear.o build/gbm/gbm.o build/gbm/gbtree.o build/metric/elementwise_metric.o build/metric/metric.o build/metric/multiclass_metric.o build/metric/rank_metric.o build/objective/multiclass_obj.o build/objective/objective.o build/objective/rank_obj.o build/objective/regression_obj.o build/tree/tree_model.o build/tree/tree_updater.o build/tree/updater_colmaker.o build/tree/updater_histmaker.o build/tree/updater_prune.o build/tree/updater_refresh.o build/tree/updater_skmaker.o build/tree/updater_sync.o dmlc-core/libdmlc.a rabit/lib/librabit.a -pthread -lm -fopenmp
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/cli_main.o src/cli_main.cc >build/cli_main.d
g++-6 -c -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -c src/cli_main.cc -o build/cli_main.o
g++-6 -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -o xgboost build/cli_main.o build/learner.o build/logging.o build/c_api/c_api.o build/c_api/c_api_error.o build/common/common.o build/data/data.o build/data/simple_csr_source.o build/data/simple_dmatrix.o build/data/sparse_page_dmatrix.o build/data/sparse_page_raw_format.o build/data/sparse_page_source.o build/data/sparse_page_writer.o build/gbm/gblinear.o build/gbm/gbm.o build/gbm/gbtree.o build/metric/elementwise_metric.o build/metric/metric.o build/metric/multiclass_metric.o build/metric/rank_metric.o build/objective/multiclass_obj.o build/objective/objective.o build/objective/rank_obj.o build/objective/regression_obj.o build/tree/tree_model.o build/tree/tree_updater.o build/tree/updater_colmaker.o build/tree/updater_histmaker.o build/tree/updater_prune.o build/tree/updater_refresh.o build/tree/updater_skmaker.o build/tree/updater_sync.o dmlc-core/libdmlc.a rabit/lib/librabit.a -pthread -lm -fopenmp
Successfully build multi-thread xgboost
user@MacBook-Pro-de-User-2:~/xgboost$ cd python-package; python3 setup.py install
Install libxgboost from: ['/Users/user/xgboost/python-package/xgboost/../../lib/libxgboost.so']
running install
running bdist_egg
running egg_info
creating xgboost.egg-info
writing xgboost.egg-info/PKG-INFO
writing dependency_links to xgboost.egg-info/dependency_links.txt
writing top-level names to xgboost.egg-info/top_level.txt
writing requirements to xgboost.egg-info/requires.txt
writing manifest file 'xgboost.egg-info/SOURCES.txt'
reading manifest file 'xgboost.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*' under directory 'xgboost/include'
warning: no files found matching '*' under directory 'xgboost/src'
warning: no files found matching '*' under directory 'xgboost/make'
warning: no files found matching '*' under directory 'xgboost/rabit'
warning: no files found matching '*' under directory 'xgboost/lib'
warning: no files found matching '*' under directory 'xgboost/dmlc-core'
warning: no previously-included files matching '*.o' found anywhere in distribution
warning: no previously-included files matching '*.a' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
writing manifest file 'xgboost.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.11-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib
creating build/lib/xgboost
copying xgboost/__init__.py -> build/lib/xgboost
copying xgboost/callback.py -> build/lib/xgboost
copying xgboost/compat.py -> build/lib/xgboost
copying xgboost/core.py -> build/lib/xgboost
copying xgboost/libpath.py -> build/lib/xgboost
copying xgboost/plotting.py -> build/lib/xgboost
copying xgboost/rabit.py -> build/lib/xgboost
copying xgboost/sklearn.py -> build/lib/xgboost
copying xgboost/training.py -> build/lib/xgboost
copying xgboost/VERSION -> build/lib/xgboost
copying xgboost/build-python.sh -> build/lib/xgboost
creating build/bdist.macosx-10.11-x86_64
creating build/bdist.macosx-10.11-x86_64/egg
creating build/bdist.macosx-10.11-x86_64/egg/xgboost
copying build/lib/xgboost/__init__.py -> build/bdist.macosx-10.11-x86_64/egg/xgboost
copying build/lib/xgboost/build-python.sh -> build/bdist.macosx-10.11-x86_64/egg/xgboost
copying build/lib/xgboost/callback.py -> build/bdist.macosx-10.11-x86_64/egg/xgboost
copying build/lib/xgboost/compat.py -> build/bdist.macosx-10.11-x86_64/egg/xgboost
copying build/lib/xgboost/core.py -> build/bdist.macosx-10.11-x86_64/egg/xgboost
copying build/lib/xgboost/libpath.py -> build/bdist.macosx-10.11-x86_64/egg/xgboost
copying build/lib/xgboost/plotting.py -> build/bdist.macosx-10.11-x86_64/egg/xgboost
copying build/lib/xgboost/rabit.py -> build/bdist.macosx-10.11-x86_64/egg/xgboost
copying build/lib/xgboost/sklearn.py -> build/bdist.macosx-10.11-x86_64/egg/xgboost
copying build/lib/xgboost/training.py -> build/bdist.macosx-10.11-x86_64/egg/xgboost
copying build/lib/xgboost/VERSION -> build/bdist.macosx-10.11-x86_64/egg/xgboost
byte-compiling build/bdist.macosx-10.11-x86_64/egg/xgboost/__init__.py to __init__.cpython-35.pyc
byte-compiling build/bdist.macosx-10.11-x86_64/egg/xgboost/callback.py to callback.cpython-35.pyc
byte-compiling build/bdist.macosx-10.11-x86_64/egg/xgboost/compat.py to compat.cpython-35.pyc
byte-compiling build/bdist.macosx-10.11-x86_64/egg/xgboost/core.py to core.cpython-35.pyc
byte-compiling build/bdist.macosx-10.11-x86_64/egg/xgboost/libpath.py to libpath.cpython-35.pyc
byte-compiling build/bdist.macosx-10.11-x86_64/egg/xgboost/plotting.py to plotting.cpython-35.pyc
byte-compiling build/bdist.macosx-10.11-x86_64/egg/xgboost/rabit.py to rabit.cpython-35.pyc
byte-compiling build/bdist.macosx-10.11-x86_64/egg/xgboost/sklearn.py to sklearn.cpython-35.pyc
byte-compiling build/bdist.macosx-10.11-x86_64/egg/xgboost/training.py to training.cpython-35.pyc
installing package data to build/bdist.macosx-10.11-x86_64/egg
running install_data
copying /Users/user/xgboost/python-package/xgboost/../../lib/libxgboost.so -> build/bdist.macosx-10.11-x86_64/egg/xgboost
creating build/bdist.macosx-10.11-x86_64/egg/EGG-INFO
copying xgboost.egg-info/PKG-INFO -> build/bdist.macosx-10.11-x86_64/egg/EGG-INFO
copying xgboost.egg-info/SOURCES.txt -> build/bdist.macosx-10.11-x86_64/egg/EGG-INFO
copying xgboost.egg-info/dependency_links.txt -> build/bdist.macosx-10.11-x86_64/egg/EGG-INFO
copying xgboost.egg-info/not-zip-safe -> build/bdist.macosx-10.11-x86_64/egg/EGG-INFO
copying xgboost.egg-info/requires.txt -> build/bdist.macosx-10.11-x86_64/egg/EGG-INFO
copying xgboost.egg-info/top_level.txt -> build/bdist.macosx-10.11-x86_64/egg/EGG-INFO
creating dist
creating 'dist/xgboost-0.6-py3.5.egg' and adding 'build/bdist.macosx-10.11-x86_64/egg' to it
removing 'build/bdist.macosx-10.11-x86_64/egg' (and everything under it)
Processing xgboost-0.6-py3.5.egg
creating /usr/local/lib/python3.5/site-packages/xgboost-0.6-py3.5.egg
Extracting xgboost-0.6-py3.5.egg to /usr/local/lib/python3.5/site-packages
Adding xgboost 0.6 to easy-install.pth file
Installed /usr/local/lib/python3.5/site-packages/xgboost-0.6-py3.5.egg
Processing dependencies for xgboost==0.6
Searching for scipy==0.18.0
Best match: scipy 0.18.0
Adding scipy 0.18.0 to easy-install.pth file
Using /usr/local/lib/python3.5/site-packages
Searching for numpy==1.11.1
Best match: numpy 1.11.1
Adding numpy 1.11.1 to easy-install.pth file
Using /usr/local/lib/python3.5/site-packages
Finished processing dependencies for xgboost==0.6
Cependant, j'aimerais savoir s'il existe un moyen plus simple de l'installer, une suggestion les gars?.
alonsopg
le 24 août 2016
@alonsopg l' pip nécessite gcc-5 ou clang-omp qui peuvent tous deux être installés via brew . Cela a été fait avant la récente mise à jour des instructions. Étant donné que les principaux utilisateurs de Mac OS X utilisent maintenant gcc-6 , je mettrai à jour la prochaine version vers gcc-6, en attendant, veuillez l'installer à partir de github comme vous l'avez compilé
phunterlau
le 24 août 2016
+1 a également rencontré exactement ce problème. Très difficile à comprendre. Notez également que clang-omp n'est plus un package de brassage :
$ brew install clang-omp
Error: No available formula with the name "clang-omp"
==> Searching for similarly named formulae...
Error: No similarly named formulae found.
==> Searching taps...
Error: No formulae found in taps.
samuela
le 26 oct. 2016
@samuela voulez-vous essayer brew install --with-clang llvm puisque clang-omp est déplacé
phunterlau
le 27 oct. 2016
@phunterlau Je n'arrive toujours pas à faire fonctionner pip install xgboost sur Mac 10.12.3
Je suis en train:
XGBoostLibraryNotFound: Cannot find XGBoost Libarary in the candicate path, did you install compilers and run build.sh in root path?
J'ai essayé:
$ brew install clang-omp
Error: No available formula with the name "clang-omp"
==> Searching for similarly named formulae...
Error: No similarly named formulae found.
==> Searching taps...
Error: No formulae found in taps.
$ brew install --with-clang llvm
Warning: llvm: this formula has no --with-clang option so it will be ignored!
# snip
$ export PATH="/usr/local/opt/llvm/bin:$PATH"
$ export LDFLAGS="-L/usr/local/opt/llvm/lib -Wl,-rpath,/usr/local/opt/llvm/lib"
$ export CPPFLAGS="-I/usr/local/opt/llvm/include"
$ pip install xgboost
# snip
XGBoostLibraryNotFound: Cannot find XGBoost Libarary in the candicate path, did you install compilers and run build.sh in root path?
# snip
$ brew install gcc --without-multilib
$ pip install xgboost
# snip
XGBoostLibraryNotFound: Cannot find XGBoost Libarary in the candicate path, did you install compilers and run build.sh in root path?
# snip
Comment sommes-nous censés l'installer à partir de PyPi sur Mac 10.12 ? L'installation à partir de la source n'est pas une solution.
JoeNyland
le 21 févr. 2017
@JoeNyland tu
brew install cmake
Vous pouvez peut-être trouver des idées sur https://github.com/dmlc/xgboost/issues/463 .
GnoDGnaF
le 11 mars 2017
@d2Code Merci, mais j'ai toujours le même message d'erreur après brew install cmake :
$ pip install xgboost
...
XGBoostLibraryNotFound: Cannot find XGBoost Libarary in the candicate path, did you install compilers and run build.sh in root path?
...
@JoeNyland Vous pouvez essayer d'installer xgboost à partir de la source, pas par pip.
GnoDGnaF
le 14 mars 2017
@d2Code Je sais que je peux installer à partir de la source, mais je dois l' installer à partir de pip. J'essaie de comprendre pourquoi je ne peux pas installer à partir de pip.
Comment sommes-nous censés l'installer à partir de
PyPisur Mac 10.12 ? L'installation à partir de la source n'est pas une solution.
JoeNyland
le 14 mars 2017
@evanuk Merci pour votre suggestion. Malheureusement, je reçois le même message d'erreur qu'avant même avec votre commande ci-dessus
$ env CC=gcc CXX=gcc pip install xgboost
Collecting xgboost
Using cached xgboost-0.6a2.tar.gz
Complete output from command python setup.py egg_info:
rm -f -rf build build_plugin lib bin *~ */*~ */*/*~ */*/*/*~ */*.o */*/*.o */*/*/*.o xgboost
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/learner.o src/learner.cc >build/learner.d
/bin/sh: clang-omp++: command not found
make: *** [build/learner.o] Error 127
make: *** Waiting for unfinished jobs....
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/logging.o src/logging.cc >build/logging.d
/bin/sh: clang-omp++: command not found
make: *** [build/logging.o] Error 127
-----------------------------
Building multi-thread xgboost failed
Start to build single-thread xgboost
rm -f -rf build build_plugin lib bin *~ */*~ */*/*~ */*/*/*~ */*.o */*/*.o */*/*/*.o xgboost
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/learner.o src/learner.cc >build/learner.d
/bin/sh: clang-omp++: command not found
make: *** [build/learner.o] Error 127
make: *** Waiting for unfinished jobs....
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/logging.o src/logging.cc >build/logging.d
/bin/sh: clang-omp++: command not found
make: *** [build/logging.o] Error 127
Successfully build single-thread xgboost
If you want multi-threaded version
See additional instructions in doc/build.md
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/private/var/folders/91/nqdcr19d0xg6sjdb4m3vcc3c0000gn/T/pip-build-ozos8fjf/xgboost/setup.py", line 29, in <module>
LIB_PATH = libpath['find_lib_path']()
File "/private/var/folders/91/nqdcr19d0xg6sjdb4m3vcc3c0000gn/T/pip-build-ozos8fjf/xgboost/xgboost/libpath.py", line 45, in find_lib_path
'List of candidates:\n' + ('\n'.join(dll_path)))
XGBoostLibraryNotFound: Cannot find XGBoost Libarary in the candicate path, did you install compilers and run build.sh in root path?
List of candidates:
/private/var/folders/91/nqdcr19d0xg6sjdb4m3vcc3c0000gn/T/pip-build-ozos8fjf/xgboost/xgboost/libxgboost.so
/private/var/folders/91/nqdcr19d0xg6sjdb4m3vcc3c0000gn/T/pip-build-ozos8fjf/xgboost/xgboost/../../lib/libxgboost.so
/private/var/folders/91/nqdcr19d0xg6sjdb4m3vcc3c0000gn/T/pip-build-ozos8fjf/xgboost/xgboost/./lib/libxgboost.so
----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /private/var/folders/91/nqdcr19d0xg6sjdb4m3vcc3c0000gn/T/pip-build-ozos8fjf/xgboost/
$ brew info gcc | head -n 5
gcc: stable 6.3.0 (bottled), HEAD
GNU compiler collection
https://gcc.gnu.org/
/usr/local/Cellar/gcc/6.3.0_1 (1,358 files, 237.8MB) *
Built from source on 2017-04-06 at 11:53:19 with: --without-multilib
Succès! ??
J'ai trouvé ça ici :
Le compilateur clang LLVM sur Mac OS X à partir de Xcode ne prend pas en charge le multithread OpenMP. Une alternative consiste à installer homebrew http://brew.sh/ et à brew install g++-5 qui fournit une prise en charge OpenMP multithread.
Gardant cela à l'esprit, j'ai essayé ceci et cela me permet d'installer à partir de pip!
$ brew install gcc<strong i="12">@5</strong>
$ pip install xgboost
Je ne sais pas pourquoi cela fonctionne, mais brew install gcc --without-multilib n'a pas fonctionné.
Je ne peux pas m'empêcher de penser que d'autres utilisateurs tomberont dans ce piège et perdront du temps à essayer de comprendre ce qui ne va pas. Espérons que cette solution de contournement fonctionne pour eux, mais je préférerais voir une routine d'installation plus fiable à partir du package pip 🤞
JoeNyland
le 6 avr. 2017
La solution de @JoeNyland a également fonctionné pour moi. Merci!!
isuda
le 7 avr. 2017
merci pour ta solution ! @JoeNyland
paulranp
le 10 mai 2017
Je n'ai pas utilisé de pip pour cela. Il y avait quelques erreurs dans la documentation, mais si vous suivez le lien ci-dessous, il existe des moyens de les résoudre.
bgbutler
le 19 mai 2017
J'ai installé gcc7.1.0 avec brew install gcc --without-multilib , puis j'ai cloné xgboost, cd-ed dans le dossier et édité make/config.mk pour avoir
# choice of compiler, by default use system preference.
export CC = gcc-7
export CXX = g++-7
# export MPICXX = mpicxx
et finalement exécuté cp make/minimum.mk ./config.mk; make -j4
puis cd-ed dans python-package et exécuté sudo python3 setup.py install
okomarov
le 29 juil. 2017
Joe Tu es incroyable !
erdemalpkaya
le 5 août 2017
@JoeNyland a rencontré exactement le même problème et votre solution était parfaite. Merci!
carletonc
le 25 août 2017
@JoeNyland Tu es mon héros ! Parfois, nous avons juste besoin d'une attitude têtue, sinon aucun problème ne pourrait être résolu. Merci!
fengerzh
le 30 août 2017
JoeNyland
le 30 août 2017
Ce n'est pas la meilleure solution; ce serait bien de ne pas avoir à dépendre d'une ancienne version de GCC. Mais ça marche pour l'instant au moins
JoeNyland
le 30 août 2017
Cependant, je reçois toujours le message d'erreur suivant après l'exécution
$ brew install gcc@5
$ pip installer xgboost
Une idée de pourquoi je reçois ça ? Beaucoup apprécier.
make: *** [build/data/simple_dmatrix.o] Error 1
Successfully build single-thread xgboost
If you want multi-threaded version
See additional instructions in doc/build.md
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/private/var/folders/60/6w9_z9yd24n7nwv1cg23zz340000gn/T/pip-build-B7gSEL/xgboost/setup.py", line 29, in <module>
LIB_PATH = libpath['find_lib_path']()
File "/private/var/folders/60/6w9_z9yd24n7nwv1cg23zz340000gn/T/pip-build-B7gSEL/xgboost/xgboost/libpath.py", line 45, in find_lib_path
'List of candidates:\n' + ('\n'.join(dll_path)))
__builtin__.XGBoostLibraryNotFound: Cannot find XGBoost Libarary in the candicate path, did you install compilers and run build.sh in root path?
List of candidates:
/private/var/folders/60/6w9_z9yd24n7nwv1cg23zz340000gn/T/pip-build-B7gSEL/xgboost/xgboost/libxgboost.so
/private/var/folders/60/6w9_z9yd24n7nwv1cg23zz340000gn/T/pip-build-B7gSEL/xgboost/xgboost/../../lib/libxgboost.so
/private/var/folders/60/6w9_z9yd24n7nwv1cg23zz340000gn/T/pip-build-B7gSEL/xgboost/xgboost/./lib/libxgboost.so
----------------------------------------
La commande "python setup.py egg_info" a échoué avec le code d'erreur 1 dans /private/var/folders/60/6w9_z9yd24n7nwv1cg23zz34000gn/T/pip-build-B7gSEL/xgboost/
cacoderquan
le 10 sept. 2017
@cacoderquan Hé, pip install xgboost --no-cache-dir .
Si vous voyez toujours l'erreur, pouvez-vous publier le résultat de :
python --versionpip --versionbrew info gcc@5
JoeNyland
le 11 sept. 2017
GitHub doit vraiment obtenir des commentaires-tldrs, j'ai passé au crible cela pendant environ 10 minutes, en essayant des déchets aléatoires en cours de route jusqu'à enfin voir le seul commentaire avec plus de 100 likes et pouces levés, etc. ).
Y a-t-il une raison particulière pour laquelle cela ne fonctionne qu'avec gcc@5 et pas avec les gcc gens ont actuellement/typiquement (j'ai gcc 7.2.0 en ce moment) ?
anderson-dan-w
le 12 oct. 2017
Salut les gars, je n'ai plus d'espoir, mais seulement vous.
J'ai réussi à installer xgboost avec l'aide d'okomarov.
```msk-wire-darkstar-m:xgboost m.keremet$ cd python-package
msk-wire-darkstar-m:python-package m.keremet$ sudo python3 setup.py install
Mot de passe:
Installez libxgboost à partir de : ['../lib/libxgboost.dylib']
installation en cours
exécuter bdist_egg
en cours d'exécution egg_info
création de xgboost.egg-info
écrire xgboost.egg-info/PKG-INFO
écrire des liens de dépendance dans xgboost.egg-info/dependency_links.txt
écrire les exigences sur xgboost.egg-info/requires.txt
écrire des noms de niveau supérieur dans xgboost.egg-info/top_level.txt
écriture du fichier manifeste 'xgboost.egg-info/SOURCES.txt'
lecture du fichier manifeste 'xgboost.egg-info/SOURCES.txt'
lecture du modèle de manifeste 'MANIFEST.in'
avertissement : aucun fichier correspondant à ' ' trouvé
trouvé dans le répertoire 'xgboost/src'
avertissement : aucun fichier correspondant à ' ' trouvé
avertissement : aucun fichier correspondant à ' ' trouvé
trouvé dans le répertoire 'xgboost/dmlc-core'
avertissement : aucun fichier précédemment inclus correspondant à ' .o' trouvé n'importe où dans la distributionavertissement : aucun fichier précédemment inclus correspondant à « .a » n'a été trouvé dans la distribution
avertissement : aucun fichier précédemment inclus correspondant à « .pyo » n'a été trouvé dans la distributionavertissement : aucun fichier précédemment inclus correspondant à « .pyc » n'a été trouvé dans la distribution
écriture du fichier manifeste 'xgboost.egg-info/SOURCES.txt'
installer le code de la bibliothèque sur build/bdist.macosx-10.7-x86_64/egg
exécuter install_lib
exécuter build_py
création de build
création de build/lib
création de build/lib/xgboost
copier xgboost/__init__.py -> build/lib/xgboost
copier xgboost/callback.py -> build/lib/xgboost
copier xgboost/compat.py -> build/lib/xgboost
copier xgboost/core.py -> build/lib/xgboost
copier xgboost/libpath.py -> build/lib/xgboost
copier xgboost/plotting.py -> build/lib/xgboost
copier xgboost/rabit.py -> build/lib/xgboost
copier xgboost/sklearn.py -> build/lib/xgboost
copier xgboost/training.py -> build/lib/xgboost
copier xgboost/VERSION -> build/lib/xgboost
copier xgboost/build-python.sh -> build/lib/xgboost
création de build/bdist.macosx-10.7-x86_64
création de build/bdist.macosx-10.7-x86_64/egg
création de build/bdist.macosx-10.7-x86_64/egg/xgboost
copier build/lib/xgboost/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/xgboost
copier build/lib/xgboost/build-python.sh -> build/bdist.macosx-10.7-x86_64/egg/xgboost
copier build/lib/xgboost/callback.py -> build/bdist.macosx-10.7-x86_64/egg/xgboost
copier build/lib/xgboost/compat.py -> build/bdist.macosx-10.7-x86_64/egg/xgboost
copier build/lib/xgboost/core.py -> build/bdist.macosx-10.7-x86_64/egg/xgboost
copier build/lib/xgboost/libpath.py -> build/bdist.macosx-10.7-x86_64/egg/xgboost
copier build/lib/xgboost/plotting.py -> build/bdist.macosx-10.7-x86_64/egg/xgboost
copier build/lib/xgboost/rabit.py -> build/bdist.macosx-10.7-x86_64/egg/xgboost
copier build/lib/xgboost/sklearn.py -> build/bdist.macosx-10.7-x86_64/egg/xgboost
copier build/lib/xgboost/training.py -> build/bdist.macosx-10.7-x86_64/egg/xgboost
copier build/lib/xgboost/VERSION -> build/bdist.macosx-10.7-x86_64/egg/xgboost
compilation d'octets build/bdist.macosx-10.7-x86_64/egg/xgboost/__init__.py vers __init__.cpython-36.pyc
compilation d'octets build/bdist.macosx-10.7-x86_64/egg/xgboost/callback.py vers callback.cpython-36.pyc
compilation d'octets build/bdist.macosx-10.7-x86_64/egg/xgboost/compat.py vers compat.cpython-36.pyc
compilation d'octets build/bdist.macosx-10.7-x86_64/egg/xgboost/core.py vers core.cpython-36.pyc
compilation d'octets build/bdist.macosx-10.7-x86_64/egg/xgboost/libpath.py vers libpath.cpython-36.pyc
compilation d'octets build/bdist.macosx-10.7-x86_64/egg/xgboost/plotting.py vers plotting.cpython-36.pyc
compilation d'octets build/bdist.macosx-10.7-x86_64/egg/xgboost/rabit.py vers rabit.cpython-36.pyc
compilation d'octets build/bdist.macosx-10.7-x86_64/egg/xgboost/sklearn.py vers sklearn.cpython-36.pyc
compilation d'octets build/bdist.macosx-10.7-x86_64/egg/xgboost/training.py vers training.cpython-36.pyc
installer les données du package sur build/bdist.macosx-10.7-x86_64/egg
exécuter install_data
copie ../lib/libxgboost.dylib -> build/bdist.macosx-10.7-x86_64/egg/xgboost
création de build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copier xgboost.egg-info/PKG-INFO -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copier xgboost.egg-info/SOURCES.txt -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copier xgboost.egg-info/dependency_links.txt -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copier xgboost.egg-info/not-zip-safe -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copier xgboost.egg-info/requires.txt -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copier xgboost.egg-info/top_level.txt -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
création dist
en créant 'dist/xgboost-0.6-py3.6.egg' et en y ajoutant 'build/bdist.macosx-10.7-x86_64/egg'
suppression de 'build/bdist.macosx-10.7-x86_64/egg' (et tout ce qui se trouve en dessous)
Traitement de xgboost-0.6-py3.6.egg
suppression de '/anaconda/lib/python3.6/site-packages/xgboost-0.6-py3.6.egg' (et tout ce qui se trouve en dessous)
création de /anaconda/lib/python3.6/site-packages/xgboost-0.6-py3.6.egg
Extraction de xgboost-0.6-py3.6.egg dans /anaconda/lib/python3.6/site-packages
xgboost 0.6 est déjà la version active dans easy-install.pth
Installé /anaconda/lib/python3.6/site-packages/xgboost-0.6-py3.6.egg
Traitement des dépendances pour xgboost==0.6
Recherche de scipy==0.19.1
Meilleure correspondance : scipy 0.19.1
Ajout de scipy 0.19.1 au fichier easy-install.pth
Utilisation de /anaconda/lib/python3.6/site-packages
Recherche de numpy==1.13.1
Meilleure correspondance : numpy 1.13.1
Ajout de numpy 1.13.1 au fichier easy-install.pth
Utilisation de /anaconda/lib/python3.6/site-packages
Dépendances de traitement terminées pour xgboost==0.6
msk-wire-darkstar-m:python-package m.keremet$ python
Python 3.6.1 |Anaconda personnalisé (x86_64)| (par défaut, le 11 mai 2017, 13:04:09)
[GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.57)] sur darwin
Tapez "aide", "droit d'auteur", "crédits" ou "licence" pour plus d'informations.
importer xgboost
Seems to work since no errors. However, when I try to import xgboost in jupyter it shoots this error:
```---------------------------------------------------------------------------
OSError Traceback (most recent call last)
<ipython-input-1-1feb2e63ea38> in <module>()
3 import numpy as np
4 import pandas as pd
----> 5 import xgboost as xgb
/anaconda/lib/python3.6/site-packages/xgboost/__init__.py in <module>()
9 import os
10
---> 11 from .core import DMatrix, Booster
12 from .training import train, cv
13 from . import rabit # noqa
/anaconda/lib/python3.6/site-packages/xgboost/core.py in <module>()
110
111 # load the XGBoost library globally
--> 112 _LIB = _load_lib()
113
114
/anaconda/lib/python3.6/site-packages/xgboost/core.py in _load_lib()
104 if len(lib_path) == 0:
105 return None
--> 106 lib = ctypes.cdll.LoadLibrary(lib_path[0])
107 lib.XGBGetLastError.restype = ctypes.c_char_p
108 return lib
/anaconda/lib/python3.6/ctypes/__init__.py in LoadLibrary(self, name)
424
425 def LoadLibrary(self, name):
--> 426 return self._dlltype(name)
427
428 cdll = LibraryLoader(CDLL)
/anaconda/lib/python3.6/ctypes/__init__.py in __init__(self, name, mode, handle, use_errno, use_last_error)
346
347 if handle is None:
--> 348 self._handle = _dlopen(self._name, mode)
349 else:
350 self._handle = handle
OSError: dlopen(/anaconda/lib/python3.6/site-packages/xgboost/./lib/libxgboost.so, 6): Library not loaded: /usr/local/opt/gcc/lib/gcc/5/libgomp.1.dylib
Referenced from: /anaconda/lib/python3.6/site-packages/xgboost/./lib/libxgboost.so
Reason: image not found
Je n'ai pas trouvé grand chose sur cette erreur. Est-ce que quelqu'un l'a rencontré ?
maximkeremet
le 30 oct. 2017
@cacoderquan J'ai rencontré le même problème que vous et je trouve qu'en fait, le gcc n'est pas lié.
Vous voudrez peut-être aussi le vérifier, mais je parie que votre problème est déjà résolu.
Pour les autres intéressés, le gcc non lié peut résulter de problèmes d'autorisation homebrew .
@JoeNyland merci beaucoup d'avoir sauvé ma journée.
nickyongzhang
le 22 nov. 2017
@cacoderquan J'ai des problèmes similaires en essayant d'installer pip xgboost
Ma version de gcc est
gcc: stable 7.2.0 (bottled), HEAD
GNU compiler collection
https://gcc.gnu.org/
/usr/local/Cellar/gcc/7.2.0 (1,487 files, 285.2MB) *
Built from source on 2017-12-01 at 17:22:53
J'ai essayé d'installer gcc plusieurs fois mais rien ne fonctionne. Chaque fois que j'ai essayé pip install xgboost, les erreurs suivantes apparaissent :
Collecting xgboost
Using cached xgboost-0.6a2.tar.gz
Complete output from command python setup.py egg_info:
rm -f -rf build build_plugin lib bin *~ */*~ */*/*~ */*/*/*~ */*.o */*/*.o */*/*/*.o xgboost
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/learner.o src/learner.cc >build/learner.d
/bin/sh: clang-omp++: command not found
make: *** [build/learner.o] Error 127
make: *** Waiting for unfinished jobs....
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/logging.o src/logging.cc >build/logging.d
/bin/sh: clang-omp++: command not found
make: *** [build/logging.o] Error 127
-----------------------------
Building multi-thread xgboost failed
Start to build single-thread xgboost
rm -f -rf build build_plugin lib bin *~ */*~ */*/*~ */*/*/*~ */*.o */*/*.o */*/*/*.o xgboost
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/learner.o src/learner.cc >build/learner.d
/bin/sh: clang-omp++: command not found
make: *** [build/learner.o] Error 127
make: *** Waiting for unfinished jobs....
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/logging.o src/logging.cc >build/logging.d
/bin/sh: clang-omp++: command not found
make: *** [build/logging.o] Error 127
Successfully build single-thread xgboost
If you want multi-threaded version
See additional instructions in doc/build.md
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/private/var/folders/19/1pcpc2r57_g6gjl_2v5_4kgc0000gn/T/pip-build-q8wmsvem/xgboost/setup.py", line 29, in <module>
LIB_PATH = libpath['find_lib_path']()
File "/private/var/folders/19/1pcpc2r57_g6gjl_2v5_4kgc0000gn/T/pip-build-q8wmsvem/xgboost/xgboost/libpath.py", line 45, in find_lib_path
'List of candidates:\n' + ('\n'.join(dll_path)))
XGBoostLibraryNotFound: Cannot find XGBoost Libarary in the candicate path, did you install compilers and run build.sh in root path?
List of candidates:
/private/var/folders/19/1pcpc2r57_g6gjl_2v5_4kgc0000gn/T/pip-build-q8wmsvem/xgboost/xgboost/libxgboost.so
/private/var/folders/19/1pcpc2r57_g6gjl_2v5_4kgc0000gn/T/pip-build-q8wmsvem/xgboost/xgboost/../../lib/libxgboost.so
/private/var/folders/19/1pcpc2r57_g6gjl_2v5_4kgc0000gn/T/pip-build-q8wmsvem/xgboost/xgboost/./lib/libxgboost.so
----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /private/var/folders/19/1pcpc2r57_g6gjl_2v5_4kgc0000gn/T/pip-build-q8wmsvem/xgboost/
AIDE PLZ
schen57
le 2 déc. 2017
@schen57 Il est documenté à plusieurs endroits que la méthode d'installation pip install xgboost ne fonctionne qu'avec GCC 5.
Veuillez brew install gcc@5 et réessayez l'installation.
https://github.com/dmlc/xgboost/blob/master/python-package/README.rst
https://xgboost.readthedocs.io/en/latest/build.html#building -on-macos
https://github.com/dmlc/xgboost/issues/1501#issuecomment -292209578
@alonsopg @phunterlau Je me demande si ce problème peut être clos maintenant ? Cela devient assez important et incontrôlable car il existe une solution au problème d'origine signalé par l'OP. La solution à long terme pour cela est de permettre à la méthode pip install xgboost de fonctionner avec les versions à jour de GCC, mais je pense que cela est mieux géré dans un problème séparé axé spécifiquement sur cela. Qu'est-ce que tu penses?
JoeNyland
le 2 déc. 2017
Oui, d'accord. L'installation de pip a été faite pour la version stable dorée de xgboost, donc une version stable de gcc a été choisie. L'installation de pip utilisera bientôt la version officielle et obtiendra le binaire précompilé comme prévu.
phunterlau
le 3 déc. 2017
Bien que j'aie installé gcc 5 (avec brew), la version xgboost utilisait toujours la version LLVM de gcc (7 dans mon cas). Pour que la version utilise gcc 5, j'ai fait :
brew install gcc<strong i="6">@5</strong>
env CC=gcc-5 CXX=g++-5 pip install xgboost
et cela a fonctionné pour moi.
davidread
le 8 janv. 2018
Ce qui suit a fonctionné pour moi pour obtenir la dernière version de XGBoost dans Anaconda sans douleur :
- installer
brew(si ce n'est déjà fait) - suivez les instructions de @davidread : (merci @davidread !!!)
brew install gcc<strong i="12">@5</strong>
env CC=gcc-5 CXX=g++-5 pip install xgboost
mweber-ovt
le 15 janv. 2018
Merci @davidread votre solution a fonctionné après avoir lutté pendant des heures. Don du ciel!!!
sagar-m
le 16 janv. 2018
En plus de la solution de
env CC=gcc-5 CXX=g++-5 pip3 install xgboost
Cela devrait fonctionner !
JingyuanXing
le 27 janv. 2018
Merci @davidread. Après avoir lutté pendant des heures avec gcc-7 et l'option --without-multilib (qui d'ailleurs a été désactivée dans gcc), j'ai encore lutté avec gcc-5 et pip jusqu'à ce que je trouve enfin votre solution ! Merci encore.
chetankshetty
le 8 févr. 2018
@cacoderquan J'ai eu le même problème. Je ne sais pas si vous avez déjà réglé ce problème (je n'ai pas lu tous les commentaires) mais j'ai pu l'installer en exécutant d'abord le fichier build.sh dans le terminal, puis en exécutant setup.py dans le package python dossier.
ssr48
le 18 févr. 2018
Merci pour toute l'aide ci-dessus, et en particulier à @davidread , votre méthode a également fonctionné pour moi, comment pouvons-nous nous assurer que nous avons le multi-threading ? Merci d'avance les gars
thinslicer
le 19 févr. 2018
@okomarov Votre solution pour installer xgboost a fonctionné pour moi. Merci beaucoup !
ecampana
le 8 mars 2018
@davidread Merci beaucoup, votre méthode a fonctionné pour moi !
drewszurko
le 12 mars 2018
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Commentaire le plus utile
Succès! ??
J'ai trouvé ça ici :
Gardant cela à l'esprit, j'ai essayé ceci et cela me permet d'installer à partir de pip!
Je ne sais pas pourquoi cela fonctionne, mais
brew install gcc --without-multilibn'a pas fonctionné.Je ne peux pas m'empêcher de penser que d'autres utilisateurs tomberont dans ce piège et perdront du temps à essayer de comprendre ce qui ne va pas. Espérons que cette solution de contournement fonctionne pour eux, mais je préférerais voir une routine d'installation plus fiable à partir du package pip 🤞