์ธ์ฌ๋ง,
๋์ปค ์ด๋ฏธ์ง๋ฅผ ์ค์ ํ๋ ๋ฐ ์ฝ๊ฐ์ ๋ฌธ์ ๊ฐ ์์ต๋๋ค. ๋๋ ์ฌ๊ธฐ์์ ๊ฐ์ด๋๋ฅผ ๋ฐ๋๋ค: https://github.com/MIT-LCP/mimic-code/tree/master/buildmimic/docker
๋ด ์์คํ :
System Information
------------------
Operating System: Windows 10 Pro 64-bit (10.0, Build 18363) (18362.19h1_release.190318-1202)
Language: English (Regional Setting: English)
Processor: Intel(R) Core(TM) i7-3520M CPU @ 2.90GHz (4 CPUs), ~2.9GHz
Memory: 16384MB RAM
Available OS Memory: 16080MB RAM
Page File: 14726MB used, 10058MB available
Windows Dir: C:\WINDOWS
(D:)์ ์๋ ๋ด ํ์ฌ ํด๋ ํธ๋ฆฌ:
.
|-- mimic_code
| |-- benchmark
| |-- buildmimic
| |-- concepts
| |-- notebooks
| |-- tests
| `-- tutorials
|-- mimic_data
| `-- csv
`-- mimic_pgdata
\mimic-data\csv
ํด๋์๋ MIMIC-III .csv.gz
๋ฐ์ดํฐ ํ์ผ์ด ์์ต๋๋ค. mimic_pgdata
ํด๋๋ ์ปจํ
์ด๋ ์คํ ์์ ์ ๋น์ด ์์ต๋๋ค. ์ปจํ
์ด๋๋ฅผ ์คํํ ํ์๋ ๋น์ด ์์ต๋๋ค. ์ปจํ
์ด๋๊ฐ ์์ฑ๋ ํ ๋ช
๋ น์ ์คํํ์ง ์๊ธฐ ๋๋ฌธ์ด๋ผ๊ณ ๊ฐ์ ํฉ๋๋ค.
๋ด๊ฐ ์ฌ์ฉํ ๋ช ๋ น(Git Bash ํฐ๋ฏธ๋ ์ฌ์ฉ):
docker run \
--name mimic \
-p 5433:5432 \
-e BUILD_MIMIC=1 \
-e POSTGRES_PASSWORD=postgres \
-e MIMIC_PASSWORD=mimic \
-v //d/mimic_data/csv:/mimic_data \
-v //d/mimic_pgdata:/var/lib/postgresql/data \
-d postgres/mimic
Docker ๋์๋ณด๋์ ๋ด ๊ฒฐ๊ณผ:
PostgreSQL Database directory appears to contain a database; Skipping initialization
2020-02-04 15:23:25.966 UTC [1] LOG: starting PostgreSQL 12.1 (Debian 12.1-1.pgdg100+1) on x86_64-pc-linux-gnu, compiled by gcc (Debian 8.3.0-6) 8.3.0, 64-bit
2020-02-04 15:23:25.974 UTC [1] LOG: listening on IPv4 address "0.0.0.0", port 5432
2020-02-04 15:23:25.974 UTC [1] LOG: listening on IPv6 address "::", port 5432
2020-02-04 15:23:25.995 UTC [1] LOG: listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432"
2020-02-04 15:23:26.014 UTC [25] LOG: database system was shut down at 2020-02-04 15:20:26 UTC
2020-02-04 15:23:26.020 UTC [1] LOG: database system is ready to accept connections
2020-02-04 15:23:26.034 UTC [32] LOG: invalid length of startup packet
2020-02-04 15:23:26.086 UTC [33] LOG: invalid length of startup packet
2020-02-04 15:23:27.219 UTC [34] LOG: invalid length of startup packet
2020-02-04 15:23:27.219 UTC [35] LOG: invalid length of startup packet
2020-02-04 15:23:28.257 UTC [36] LOG: invalid length of startup packet
2020-02-04 15:23:28.259 UTC [37] LOG: invalid length of startup packet
2020-02-04 15:23:29.264 UTC [38] LOG: invalid length of startup packet
2020-02-04 15:23:29.269 UTC [39] LOG: invalid length of startup packet
2020-02-04 15:23:29.795 UTC [40] LOG: invalid length of startup packet
2020-02-04 15:23:30.278 UTC [42] LOG: invalid length of startup packet
2020-02-04 15:23:30.278 UTC [41] LOG: invalid length of startup packet
2020-02-04 15:23:30.824 UTC [43] LOG: invalid length of startup packet
2020-02-04 15:23:31.287 UTC [44] LOG: invalid length of startup packet
2020-02-04 15:23:31.292 UTC [45] LOG: invalid length of startup packet
2020-02-04 15:23:31.834 UTC [46] LOG: invalid length of startup packet
2020-02-04 15:23:32.854 UTC [47] LOG: invalid length of startup packet
2020-02-04 15:23:33.863 UTC [48] LOG: invalid length of startup packet
2020-02-04 15:23:34.875 UTC [49] LOG: invalid length of startup packet
docker images
์ ์ถ๋ ฅ:
REPOSITORY TAG IMAGE ID CREATED SIZE
postgres/mimic latest 10d900d346ac 19 minutes ago 440MB
postgres latest cf879a45faaa 2 days ago 394MB
k8s.gcr.io/kube-apiserver v1.15.5 e534b1952a0d 3 months ago 207MB
k8s.gcr.io/kube-controller-manager v1.15.5 1399a72fa1a9 3 months ago 159MB
k8s.gcr.io/kube-proxy v1.15.5 cbd7f21fec99 3 months ago 82.4MB
k8s.gcr.io/kube-scheduler v1.15.5 fab2dded59dd 3 months ago 81.1MB
golang 1.11-alpine e116d2efa2ab 5 months ago 312MB
docker/kube-compose-controller v0.4.23 a8c3d87a58e7 8 months ago 35.3MB
docker/kube-compose-api-server v0.4.23 f3591b2cb223 8 months ago 49.9MB
alpine 3.5 f80194ae2e0c 12 months ago 4MB
k8s.gcr.io/coredns 1.3.1 eb516548c180 12 months ago 40.3MB
k8s.gcr.io/etcd 3.3.10 2c4adeb21b4f 14 months ago 258MB
k8s.gcr.io/pause 3.1 da86e6ba6ca1 2 years ago 742kB
๋ ๋ ธ๋ ฅ ํ์ด:
์์งํ Docker์ ์ต์ํ์ง ์์ง๋ง @xiaosongz ๋๋ @haobibo ๋ ๋ ๋ค ์ต๊ทผ์ ๋น๋ ์์ ์ ํ๊ธฐ ๋๋ฌธ์ ์ธ๊ธํ ์ ์์ต๋๋ค.
@khalid-hussain๋, @xiaosongz ๋์ด ๋์ปค ์ด๋ฏธ์ง ๋น๋ ํ์ผ setup.sh
์์ ๋ฒ๊ทธ๋ฅผ ๋ฐ๊ฒฌํ์ต๋๋ค.
๊ทธ๋ฆฌ๊ณ ์ด๋ฅผ ์์ ํ๊ธฐ ์ํด PR https://github.com/MIT-LCP/mimic-code/pull/693 ์ ๋ง๋ค์์ต๋๋ค.
์
๋ฐ์ดํธ๋ setup.sh
(๋๋ https://github.com/haobibo/mimic-code์์ ์ง์ ๋ณต์ )๋ฅผ ๋ฐ๋ผ ์
๋ฐ์ดํธ๋ ์ฝ๋๊ฐ ์๋ํ๋์ง ํ์ธํ์ญ์์ค.
์ฃ์กํฉ๋๋ค. ๋ค๋ฅธ ๋ฌธ์ ์ ๋ชฐ๋ํ์ต๋๋ค. ๋ด์ผ ์๋ํด ๋ณด๊ฒ ์ต๋๋ค. ์ ์ํ ๋ต๋ณ์ ๊ฐ์ฌ๋๋ฆฝ๋๋ค.
์
๋ฐ์ดํธ : ์ฌ์ ํ ๊ฐ์ ๋ฌธ์ ๊ฐ ์์ต๋๋ค. setup.sh
๋ฐ Dockerfile
๋ ์
๋ฐ์ดํธํ์ง๋ง ์ฌ์ ํ ๋์ผํ ์ถ๋ ฅ์ ์ ๊ณตํฉ๋๋ค.
์๋ ํ์ธ์, ์ ๋ ์ด ๋ฌธ์ ๋ฅผ ๋ฐ๊ฒฌํ์ต๋๋ค. ์ง๊ธ ํด๊ฒฐ์ฑ ์ด ์์ต๋๊น?
+1
์ฌ๊ธฐ์ ๊ฐ์ ๋ฌธ์ ๊ฐ ์์ต๋๋ค.
+1
๋๊ตฌ๋ ์ง ํด๊ฒฐ์ฑ ์ด ์์ต๋๊น! ์ฐ๋ฆฌ ์์คํ ์๋ ๊ฐ์ ๋ฌธ์ ๊ฐ ์์ต๋๋ค.
+1
+1
+1
+1
+1
+1
+1
์ด๋ค ํด๊ฒฐ์ฑ ?
์ ์ด์์ฌ ๋์์ฃผ์ธ์, ์ ๋ ๋ช ์๊ฐ ๋์ ์ฌ๊ธฐ์ ๊ฐํ ์์์ต๋๋ค
์คํ์ค์ ๋๊ตฐ๊ฐ๊ฐ Docker ์ด๋ฏธ์ง๋ฅผ ์์ ํ๋ ๋ฐฉ๋ฒ์ ์ด๋ ์์ ์์ ์ดํด๋ณผ ์ ์์ง๋ง ๋ฆฌ์์ค๊ฐ ์ ํ๋์ด ์์ผ๋ฉฐ ์ด๋ ์ฐ์ ์์ ์ค ํ๋๊ฐ ์๋๋๋ค. ์ปค๋ฎค๋ํฐ์ ํ ๋ฆฌํ์คํธ๋ฅผ ๊ฒํ ํด ๋๋ฆฌ๊ฒ ์ต๋๋ค.
์ฌ๊ธฐ์๋ ๊ฐ์ ๋ฌธ์
์ฌ๊ธฐ ๊ฐ์ ๋ฌธ์
๋๋ ๊ฐ์ ๋ฌธ์ ์ ์ง๋ฉดํ๊ณ ์์ต๋๊น?
-03-11 08:31:31.885 UTC [1] ๋ก๊ทธ: x86_64-pc-linux-gnu์์ PostgreSQL 13.2(Debian 13.2-1.pgdg100+1) ์์, gcc(Debian 8.3.0-6) 8.3์ผ๋ก ์ปดํ์ผ๋จ. 0, 64๋นํธ
2021-03-11 08:31:31.885 UTC [1] ๋ก๊ทธ: IPv4 ์ฃผ์ "0.0.0.0", ํฌํธ 5432์์ ์์ ๋๊ธฐ
2021-03-11 08:31:31.885 UTC [1] ๋ก๊ทธ: IPv6 ์ฃผ์ "::", ํฌํธ 5432์์ ์์ ๋๊ธฐ ์ค
2021-03-11 08:31:31.899 UTC [1] ๋ก๊ทธ: Unix ์์ผ "/var/run/postgresql/.s.PGSQL.5432"์์ ์์ ๋๊ธฐ ์ค
2021-03-11 08:31:31.914 UTC [66] LOG: ๋ฐ์ดํฐ๋ฒ ์ด์ค ์์คํ
์ด 2021-03-11 08:31:31 UTC์ ์ข
๋ฃ๋์์ต๋๋ค.
2021-03-11 08:31:31.924 UTC [1] ๋ก๊ทธ: ๋ฐ์ดํฐ๋ฒ ์ด์ค ์์คํ
์ด ์ฐ๊ฒฐ์ ์๋ฝํ ์ค๋น๊ฐ ๋์์ต๋๋ค.
2021-03-11 08:31:51.485 UTC [73] ์น๋ช
์ : ์ฌ์ฉ์ "pgadmin"์ ๋ํ ์ํธ ์ธ์ฆ ์คํจ
2021-03-11 08:31:51.485 UTC [73] DETAIL: ์ญํ "pgadmin"์ด ์กด์ฌํ์ง ์์ต๋๋ค.
pg_hba.conf ๋ผ์ธ 99์ ์ผ์นํ๋ ์ฐ๊ฒฐ: "host all all all md5"
2021-03-11 08:32:00.969 UTC [74] ์น๋ช
์ : ์ฌ์ฉ์ "pgadmin"์ ๋ํ ์ํธ ์ธ์ฆ ์คํจ
2021-03-11 08:32:00.969 UTC [74] DETAIL: ์ญํ "pgadmin"์ด ์กด์ฌํ์ง ์์ต๋๋ค.
pg_hba.conf ๋ผ์ธ 99์ ์ผ์นํ๋ ์ฐ๊ฒฐ: "host all all all md5"
2021-03-11 08:32:06.826 UTC [75] ์น๋ช
์ : ์ฌ์ฉ์ "pgadmin"์ ๋ํ ์ํธ ์ธ์ฆ ์คํจ
2021-03-11 08:32:06.826 UTC [75] DETAIL: ์ญํ "pgadmin"์ด ์กด์ฌํ์ง ์์ต๋๋ค.
pg_hba.conf ๋ผ์ธ 99์ ์ผ์นํ๋ ์ฐ๊ฒฐ: "host all all all md5"
2021-03-11 08:33:38.128 UTC [78] ์น๋ช
์ : ์ฌ์ฉ์ "pgadmin"์ ๋ํ ์ํธ ์ธ์ฆ ์คํจ
2021-03-11 08:33:38.128 UTC [78] DETAIL: ์ญํ "pgadmin"์ด ์กด์ฌํ์ง ์์ต๋๋ค.
pg_hba.conf ๋ผ์ธ 99์ ์ผ์นํ๋ ์ฐ๊ฒฐ: "host all all all md5"
2021-03-11 08:33:52.780 UTC [79] ๋ก๊ทธ: ์์ ํจํท ๊ธธ์ด๊ฐ ์๋ชป๋์์ต๋๋ค.
2021-03-11 08:33:52.783 UTC [80] LOG: ์์ ํจํท์ ๊ธธ์ด๊ฐ ์๋ชป๋์์ต๋๋ค............................. ..............
๊ฐ์ ๋ฌธ์
๊ฐ์ฅ ์ ์ฉํ ๋๊ธ
์ ๋ฐ์ดํธ : ์ฌ์ ํ ๊ฐ์ ๋ฌธ์ ๊ฐ ์์ต๋๋ค.
setup.sh
๋ฐDockerfile
๋ ์ ๋ฐ์ดํธํ์ง๋ง ์ฌ์ ํ ๋์ผํ ์ถ๋ ฅ์ ์ ๊ณตํฉ๋๋ค.